MutMapper - Identify transposon, EMS, or UV induced mutations in a strain as compared to a reference genome. Beth, Daniel
Transcriptomicon / RNAseq - Develop a pipeline for processing raw RNAseq, assembling into transcripts, identifying ORFs, and extracting genes which have long UTRs, features. Amanda, Mari, Madison, Tierney
Phylotantrum / Gene Tree - Build a pipeline to take a single gene sequence (protein) and identify homologs, align these, trim, and build gene trees. Refine tree or alignment to remove outliers and build a final gene alignment and Tree. Laura, Luke, Sam, Stephanie
Selectionable Gene Trees - Selection identification by dN/dS analysis of paralogs/orthologys. Kaleigh,Josh
INDELible - Taking population genomic resequencing data, identify insertion/deletion patterns across a genome. Are there non random distributions of indel size across a chromosome? Generate reports/interactive view of indel sizes and sequence preferences. Glen,Chris
Microbiomifcation_16Ssss - Process 16S data to ask questions about OTU picking and mapping to better custom databases Hannah,Nicole,Nat,Julia
ProteinStatsClassify - Protein statistics from protein. Can develop a classifier for outlier proteins and/or ecological adaptations (thermophillic vs halophillic). Using Bacteria and Fungal sequences. Jesus