Microbiome data

Please see this well put together class https://gibbons-lab.github.io/isb_course_2021/16S/ - the class materials are also available in a github https://github.com/Gibbons-Lab/isb_course_2021.

To run qiime2 on the HPCC - where it is already installed - you can do this INSTEAD OF THE EXAMPLE IN THE SITE

module load qiime2
conda activate qiime2

Remember if you want to do the work in the tutorial you need to setup a job run with an interactive session. This example starts a 2hr job on the short queue - you can replace -p short with -p epyc and a longer --time if you want more time. See UNIX IV for how to choose -c, --mem and --time.

srun -p short -N 1 -n 1 -c 8 --mem 24gb --time 2:00:00 --pty bash -l
module load qiime2
conda activate qiime2