Python
Python programming for biological data: from your first script to parsing sequence files, working with tables, regular expressions, and plots. The lectures build on each other and on the UNIX lectures.
| Lecture | Class |
|---|---|
| Python I: Values, Variables and Strings (PDF) | Oct 6 |
| Python II: Decisions, Lists, Loops and Files (PDF) | Oct 8 |
| Python III: Dictionaries, Sets, Tuples and Functions (PDF) | Oct 13 |
| Python Workshop: Practice with Real Data (PDF) | practice |
| Python IV: Modules, Packages and Biopython (PDF) | Oct 20 |
| Python IV: Tables with Pandas (PDF) | Oct 20 |
| Python V: Regular Expressions (PDF) | Oct 22 |
| Python V: Regular Expressions Worked Examples (PDF) | Oct 22 |
| Plotting Data with Python (PDF) |
Related: Tabular data with DuckDB and SQL, Plotting with R, and the Python workshops in Bioinformatics (SNPs per gene, orthologs and gene networks).
Table of contents
- Python I: Values, Variables and Strings
- Python II: Decisions, Lists, Loops and Files
- Python III: Dictionaries, Sets, Tuples and Functions
- Python Workshop: Practice with Real Data
- Python IV: Modules, Packages and Biopython
- Python IV: Tables with Pandas
- Python V: Regular Expressions
- Python V: Regular Expressions Worked Examples
- Plotting Data with Python