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GEN220: High Throughput Biological Data Analysis
  • Home
  • UNIX
    • UNIX I: Logging In and Command Line Basics
    • UNIX II: Files, Data and Running Programs
    • UNIX III: Shell Programming
    • UNIX III Lab: Data Processing with Pipes
    • UNIX IV: Running Analyses on the Cluster
  • Python
    • Python I: Values, Variables and Strings
    • Python II: Decisions, Lists, Loops and Files
    • Python III: Dictionaries, Sets, Tuples and Functions
    • Python Workshop: Practice with Real Data
    • Python IV: Modules, Packages and Biopython
    • Python IV: Tables with Pandas
    • Python V: Regular Expressions
    • Python V: Regular Expressions Worked Examples
    • Plotting Data with Python
  • Bioinformatics
    • Basics and BLAST
    • Workshop: Parsing Data
    • Short Reads
    • Genomic Data Ranges
    • RNASeq
    • Variation and SNPs
    • Workshop: SNPs per Gene and Splice Sites
    • Protein Domains
    • Orthology
    • Workshop: Orthologs and Gene Networks
    • Phylogeny and Gene Families
    • Sequence Evolution and Statistics
    • Microbiome
    • Genome Browsers
  • Other Skills and Tools
    • Plotting with R and ggplot2
    • Building Websites
    • Tables: CSV, Parquet and SQL with DuckDB
  • Assignments
    • HW0 - Intro
    • HW1 - Unix
    • HW2 - Python 1
    • HW3 - Python and BLAST
    • HW4 - AI Programming
    • HW5 - GitHub Website
    • Project Topics
    • Project Team Ideas
    • Project Report Template
    • Project Presentation Info
  • Resources
    • Syllabus
    • Git and GitHub Guide
    • SSH Keys
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GEN220 Fall 2026 · UC Riverside · Jason Stajich

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